Computational, evolutionary and human genomics at Stanford

This is the blog for the Center for Computational, Evolutionary, and Human Genomics at Stanford.

Latest Posts:

  • Panel discussion: Modeling & Theory Community series – “Strategies for teaching mathematical topics in population biology”

    Panel discussion: Modeling & Theory Community series – “Strategies for teaching mathematical topics in population biology”

    Ailene MacPherson (Simon Fraser University) facilitated a panel discussion on Mar 20, 2024 on strategies for teaching mathematical topics in population biology. Anna Dornhous and Joanna Masel (University of Arizona), Pleuni Pennings (San Francisco State University), and Troy Day (Queen’s University) were the panelists giving their thoughts on this topic, and all attendees had an… Read more

  • Modeling & Theory in Population Biology: Software Series – Ben Haller – SLiM

    Modeling & Theory in Population Biology: Software Series – Ben Haller – SLiM

    For the second installment of MTPB’s software series, Ben Haller of Cornell University spoke about SLiM on March 13, 2024. Ben began by acknowledging the main contributors to the project besides himself. Philip Messer wrote the original SLiM, and Peter Ralph is a major contributor – however, Ben acknowledged that many others have also contributed… Read more

  • Fellows Feature: Nandita Garud

    Fellows Feature: Nandita Garud

    Can you tell us about your research? What were you working on as a fellow, and how has it progressed since completing the fellowship? My research in Dr. Dmitri Petrov’s lab as a graduate student was on understanding the rapidity of adaptation in natural populations of Drosophila melanogaster. Adaptation is a process whereby a population… Read more

  • Modeling & Theory in Population Biology Session 6 – Mia Miyagi, Francois Bienvenu

    Modeling & Theory in Population Biology Session 6 – Mia Miyagi, Francois Bienvenu

    On February 28, 2024, Francois Bienvenu and Mia Miyagi presented on models that have been relevant to their respective research areas. Francois Bienvenu from Laboratoire de Mathématiques de Besançon began with his presentation: “Where do phylogenetic trees come from?” Starting by drawing a basic phylogenetic tree, Bienvenu noted that it is a good structure to… Read more

  • Modeling & Theory in Population Biology Session 5 – MontGomery Slatkin, Sally Otto, John Wakeley

    Modeling & Theory in Population Biology Session 5 – MontGomery Slatkin, Sally Otto, John Wakeley

    On February 20, 2024, John Wakeley and Sally Otto spoke with Montgomery Slatkin, Professor Emeritus in the Department of Integrative Biology at the University of California, Berkeley, on how the field of modeling has developed over the years. The following is a summary of their conversation, minimally paraphrased and edited for clarity. Otto: When was… Read more

  • Modeling & Theory in Population Biology Session 3 – Ben Ashby, Caroline Colijin, Laura Kubatko, Daniel Weissman

    Modeling & Theory in Population Biology Session 3 – Ben Ashby, Caroline Colijin, Laura Kubatko, Daniel Weissman

    On January 30, 2024, four panelists from three institutions sat down with Ailene MacPherson to talk about the unique paths of their careers as interdisciplinary researchers. The following is a summary of their conversation, paraphrased and edited for clarity. Give a brief description of your career path, and how you ended up in your department.… Read more

  • Modeling & Theory in Population Biology Session 2 – Bruce Weir

    Modeling & Theory in Population Biology Session 2 – Bruce Weir

    For the second installment of the Modeling & Theory in Population Biology series on January 17, 2024, Bruce Weir presented his talk on applications for population genetics in forensics. He opened with a recent homicide case as an example, in which DNA from the involved weapon’s trigger matched the DNA profile of a person of… Read more

  • Modeling & Theory in Population Biology Session 1 – Maria Servedio, Marc Feldman, Joel E. Cohen, Tanja Stadler

    Modeling & Theory in Population Biology Session 1 – Maria Servedio, Marc Feldman, Joel E. Cohen, Tanja Stadler

    The January 11, 2024 kickoff event of the Modeling & Theory in Population Biology series featured four speakers: Maria Servedio from the University of North Carolina, Marc Feldman from Stanford, Joel E. Cohen from Rockefeller University, and Tanja Stadler from ETH Zürich. This group of speakers reflected the initial inspiration for this program: how diverse… Read more

  • Fellows Feature: Nicolas Alcala

    Fellows Feature: Nicolas Alcala

    Nicolas Alcala was a 2014-15 fellow who has gone on to become a computational biologist for the World Health Organization, focusing on multi-omic integration and cancer evolution for the Rare Cancers Genomics Initiative. How did you first get involved with the center? What was your original focus as a fellow, and how did it evolve… Read more

  • Fellows Feature: Clare Abreu

    Fellows Feature: Clare Abreu

    Clare’s fellowship in 2020 was a crucial step in her unusual career journey from journalist to biologist. Read on to learn about the inspiration behind her research! Can you tell us about your research? What were you working on as a fellow, and how has it progressed since completing the fellowship? I study evolution in… Read more

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