The fruit fly and its microbiome


Philipp Messer is a research associate in the Petrov lab

This post was written by Philipp Messer.

Although fruit flies are one of the most important model organisms in genetics, evolution, and immunology, surprisingly little is known about their associated microorganisms (their microbiome). This is even the more surprising if you consider that the microbiome can strongly affect quantitative traits in flies, for example their growth rate and cold tolerance. Furthermore, the natural environment of fruit flies – rotting fruit – is very rich in microorganisms.

All organisms interact with associated microbes

Because microbes can influence the phenotype of organisms, we expect such interactions to be subject to natural selection. Genes involved in pathogen defense are indeed amongst the fastest evolving genes. But interactions with microbes do not always just lead to an evolutionary arms race between microbes and their hosts, they can also facilitate major evolutionary innovations. Prominent examples of such innovations are the light organ of the bobtail squid that arose through a symbiotic relationship between squids and bioluminescent bacteria, or cellulose digestion in termites which relies on microbes in their guts. Hence, to improve our understanding of the evolution of fruit flies, we need to better understand how they interact and coevolve with their associated microorganisms.

In their paper “Host species and environmental effects on bacterial communities associated with Drosophila in the laboratory and in the natural environment”, Fabian Staubach and his colleagues at Stanford and the Max Planck Institute for Evolutionary Biology in Plön shed light on some of the major questions regarding Drosophila associated microbes. Beyond finding out which bacteria are present in flies, they assess the relative roles of host species and environmental effects on bacterial communities, detect candidate natural pathogens, and find interesting results regarding lab-of-origin-effects on the fly microbial community.

The microbiome of fruitflies

We need more studies like this

These results are not only highly relevant for everyone working with Drosophila, but are also a strong reminder that we cannot understand any model organism without taking its associated microbiota into account. We therefore need more microbiome studies like that of Staubach et al to identify the microbes that coevolve with their hosts and understand how the genomes of hosts and microbes interact in the evolutionary process. I would not be surprised if interactions between microbes and their hosts turn out to be among the biggest selective forces in many organisms.

The paper is a fun and easy read and can be found at here. Fabian was a postdoc in the Petrov lab from 2010 to 2013 and has just moved to the University of Freiburg in Germany to start his own group, where he plans to follow his interest to deepen our understanding of the role of microbes in adaptation.

Citation: Staubach F, Baines JF, Künzel S, Bik EM, Petrov DA (2013) Host Species and Environmental Effects on Bacterial Communities Associated with Drosophila in the Laboratory and in the Natural Environment. PLoS ONE 8(8): e70749. doi:10.1371/journal.pone.0070749


Fabian Staubach studies the microbiome of fruitflies.


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